Fixed-term

Are you an experienced researcher in microbial genomics and bioinformatics with a strong record of university teaching, and expertise in whole-genome sequencing (WGS) analysis, machine learning and computational data processing applied to antimicrobial resistance (AMR)? Do you want to train the next generation of scientists in computational microbiology, while advancing applied research in computational genomics of microbial pathogens, with a primary focus on bacterial AMR and One Health surveillance? If so, we invite you to join the Research Group for Global Capacity Building at the National Food Institute, Technical University of Denmark (DTU), as Senior Researcher. The position combines primarily a teaching and training mandate with applied research in computational genomics of microbial pathogens. An additional component of the position will also support scientific advisory and reference-laboratory functions linked to EURL-AMR, the WHO Collaborating Centre and the FAO Reference Laboratory. Responsibilities and qualificationsYour principal focus will be on applied research advancing bioinformatic analysis, machine learning and computational genomics of microbial pathogens, primarily on bacterial AMR and One Health surveillance. Another key focus will be teaching at BSc, MSc and PhD level in microbial genomics, bioinformatics and machine learning, complemented by national and international training courses across Europe, Africa and Asia. Where relevant, you will also contribute to selected scientific advisory and reference-laboratory activities supporting national and international collaborators and stakeholders, including the European Commission, EFSA, ECDC, IAEA, FAO, WHO and the Danish Veterinary and Food Administration. Your primary tasks will be to: Conduct applied research advancing bioinformatic analysis, machine learning and computational genomics of microbial pathogens, with a primary focus on bacterial AMR and One Health surveillance Develop, validate, document and disseminate reproducible bioinformatic pipelines and machine-learning approaches for genotype-based AMR detection and prediction, plasmid characterization, molecular typing, genomic epidemiology and One Health surveillance Independently lead and coordinate teaching, research and bioinformatics activities within the group, with responsibility for mentoring colleagues and managing the task allocation of a small sub-group of bioinformaticians, while developing reproducible workflows and ensuring the quality and timely delivery of genomic analyses Develop and deliver lectures, practical classes and supervised projects at BSc, MSc and PhD level in microbial genomics, bioinformatics, machine learning and applied omics, including the development of pedagogical materials and reproducible computational workflows Supervise PhD, MSc and BSc students working at the interface between microbiology and bioinformatics, fostering interdisciplinary thinking and strong computational skills Co-organize and deliver national and international training courses in WGS-based microbial genomics, bioinformatic analysis of microbial genomes, machine learning and genomic surveillance workflows for AMR, in collaboration with global partners and stakeholders through on-site missions and online courses across Europe, Africa, Asia and Latin America Contribute, where relevant, to scientific advisory and reference-laboratory activities linked to EURL-AMR, the WHO Collaborating Centre and the FAO Reference Laboratory, including selected inter-laboratory comparative testing schemes and participation in next-generation sequencing working groups We expect that you hold: A PhD in Microbiology, Pharmaceutical Sciences or a related biological discipline, combined with formal academic training (e.g. an MSc or postgraduate diploma) in Bioinformatics, Computational Biology or Biostatistics. Both qualifications are mandatory, as the role requires microbiological depth to design research questions, interpret findings and teach core concepts, together with the computational expertise needed to develop pipelines, apply machine-learning methods and analyze high-throughput sequencing data Substantial postdoctoral experience and an established publication record in AMR, microbial genomics, bioinformatics or a closely related field, documented by a sustained record of peer-reviewed publications, reflecting scientific maturity and impact at senior-researcher level Hands-on expertise in WGS (including Oxford Nanopore long-read sequencing), bioinformatic analysis of microbial genomes, pipeline development and machine-learning approaches applied to genomic and high-throughput data A demonstrated and extensive university teaching record across BSc, MSc and PhD level, including course design, supervision of student projects and theses, and development of pedagogical materials and reproducible computational workflows A proven record of delivering national and international training and capacity-building activities, particularly in low- and middle-income countries It will be considered an advantage if you also have: Experience contributing to scientific advisory or reference-laboratory activities related to AMR surveillance, including genomic proficiency testing, inter-laboratory comparative testing, or support to national and international laboratory networks Fluency in Portuguese, Spanish or French, reflecting the group’s international capacity-building collaborations across Europe, Africa, Asia and Latin America You must contribute to teaching at the Department. DTU employs two working languages: Danish and English. You are expected to be fluent in at least one of these languages, and in time are expected to master both. As a formal qualification you must hold a PhD degree (or equivalent) as well as academic qualifications equivalent to those obtained by holding a position as a researcher or postdoc. To be appointed as a senior researcher, you must have completed a didactic/pedagogic education. If you do not have the necessary education, then it is possible to complete this requirement within a period of two years of appointment. You will be assessed against the responsibilities and qualifications stated above and the following general criteria: Research experience  Experience and quality of teaching Research vision and potential International impact and experience  Societal impact Innovativeness, including commercialization and collaboration with industry Leadership, collaboration, and interdisciplinary skills Communication skills Salary and terms of employment The appointment will be based on the collective agreement with the Danish Confederation of Professional Associations. The allowance will be agreed upon with the relevant union. Starting date is as soon as possible (or according to mutual agreement). The position is a full-time position. You can read more about career paths at DTU here. Further information Further information may be obtained from Professor and Head of Research Group, Rene Hendriksen, at rshe@food.dtu.dk  You can read more about the DTU National Food Institute at www.food.dtu.dk/englishand the Research Group for Global Capacity Building at https://www.food.dtu.dk/english/research/global-capacity-building. If you are applying from abroad, you may find useful information on working in Denmark and at DTU at DTU – Moving to Denmark.  Application procedurePlease submit your online application no later than 26 June 2026 (23:59 Danish time).  Applications must be submitted as one PDF file containing all materials to be given consideration. To apply,

Infectious diseases caused by bacterial, viral and parasitic pathogens, including those that are antimicrobial resistant, constitute one of the biggest threats to human and planetary health. The Genomic Epidemiology group at the National Food Institute at DTU is together with partners at University of Copenhagen, Statens Serum Institut and globally developing GPAP – a novel online free for use platform for analysis and sharing of genomic data for all pathogens infecting animals, humans and plants. To do this we shall offer a broad range of online bioinformatic pipelines for analysing bacterial, parasitic, fungal and viral genomes and metagenomes. We are seeking two candidates for vacant positions in bioinformatics to support, maintain and develop existing bioinformatic tools and pipelines, and provide ad hoc assistance with genomic analyses to the different researchers in the group. The positions will contribute to the continued operation, implementation, and documentation of established analytical workflows. Projects will involve focusing on covering classical bioinformatics methods, including sequence alignment and phylogenetic analyses, as well as the application and maintenance of existing machine-learning approaches and biological language models. The candidates will be affiliated with the Genomic Epidemiology Research Group, which combines expertise in conventional and molecular microbiology with epidemiology and bioinformatics. The jobWe place emphasis on a high level of professionalism among our staff, so skills development is an integral part of our organization.  Your main responsibility will be to develop, maintain and support existing bioinformatic tools, workflows, and services, as well as assist with routine and ad hoc bioinformatic analyses. The role includes supporting ongoing research activities, contributing to data processing workflows, and ensuring stable and reproducible analytical operations. We offer great flexibility in the position. Our expectations of you Practical experience with coding in Python as well as scripting and maintenance of existing codebases  Experience working in Unix-based systems Extensive knowledge of microbial genomics and genomic analysis workflows  Experience with established machine learning and deep learning approaches in bioinformatic workflows Extensive knowledge of existing bioinformatic algorithms and tools Experience in microbial genomic and metagenomic analyses.  As a formal qualification, you must have a master’s degree in engineering or equivalent within relevant field. What we offer in returnWe offer an interesting and challenging job in an international atmosphere with the focus on research, teaching, innovation and scientific advice for the benefit of the surrounding community. We place emphasis on a high level of professionalism among our staff, so skills development is an integral part of our organization. We offer great flexibility in the position. In the area of technical and natural sciences, DTU is one of the leading research and education institutions in Europe. Salary and appointment termsThe appointment will be based on the collective agreement with the Danish Confederation of Professional Associations (AC). The positions are permanent full-time positions. Starting date is 1 August 2026 (or according to mutual agreement). The workplace is DTU Lyngby Campus.  Application and contactPlease submit your online application no later than 3 July 2026. Open the “Apply now” link, fill out the form and attach your motivated application, CV and exam certificates.  Further information may be obtained from Head of research group, Professor, Frank Aarestrup, fmaa@food.dtu.dk. More information about the research group at Genomic Epidemiology More information about the Institute at DTU National Food Institute Applications received after the deadline will not be considered. All interested candidates irrespective of age, gender, disability, race, religion or ethnic background are encouraged to apply. As DTU works with research in critical technology, which is subject to special rules for security and export control, open-source background checks may be conducted on qualified candidates for the position. Apply Now